Flatmap Maker
latest
Contents:
Readme File
Running mapmaker
Manifest Files
Flatmap Source Diagrams
Shape Markup
Datasets
Reference
Flatmap Maker
Index
Index
A
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B
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C
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D
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E
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F
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G
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H
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I
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J
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K
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L
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M
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N
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O
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P
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R
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S
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T
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U
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V
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W
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X
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Y
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Z
A
add() (mapmaker.properties.pathways.ConnectionSet method)
(mapmaker.sources.svg.definitions.ObjectStore method)
add_alpha() (in module mapmaker.sources)
add_class() (in module mapmaker.sources.powerpoint.svgutils)
add_component() (mapmaker.sources.fc_powerpoint.connections.ConnectionClassifier method)
add_connection() (mapmaker.knowledgebase.sckan.SckanNeuronPopulations method)
(mapmaker.sources.fc_powerpoint.connections.ConnectionClassifier method)
(mapmaker.sources.fc_powerpoint.connections.ConnectionGraph method)
add_connection_set() (mapmaker.properties.pathways.Pathways method)
add_connectivity() (mapmaker.properties.pathways.Pathways method)
(mapmaker.properties.pathways.ResolvedPathways method)
add_connectivity_group() (mapmaker.sources.svg.cleaner.SVGCleaner method)
add_connectivity_model() (mapmaker.properties.pathways.Pathways method)
add_connectivity_path() (mapmaker.properties.pathways.Pathways method)
add_connector() (mapmaker.sources.fc_powerpoint.connections.ConnectionClassifier method)
(mapmaker.sources.fc_powerpoint.connections.ConnectionGraph method)
add_definition() (mapmaker.sources.svg.definitions.DefinitionStore method)
add_definitions() (mapmaker.sources.svg.definitions.DefinitionStore method)
add_feature() (mapmaker.flatmap.feature.FeatureAnatomicalNodeMap method)
(mapmaker.flatmap.layers.FeatureLayer method)
(mapmaker.flatmap.layers.MapLayer method)
add_features() (mapmaker.flatmap.layers.MapLayer method)
add_file() (mapmaker.output.sparc_dataset.DirectoryManifest method)
add_ftu() (mapmaker.annotation.json_annotations.JsonAnnotations method)
add_layer() (mapmaker.flatmap.FlatMap method)
(mapmaker.sources.MapSource method)
add_marker_definitions() (in module mapmaker.sources.powerpoint.svgutils)
add_markup() (in module mapmaker.sources.powerpoint.svgutils)
add_metadata() (mapmaker.knowledgebase.celldl.CellDLGraph method)
(mapmaker.output.mbtiles.MBTiles method)
add_nerve() (mapmaker.annotation.json_annotations.JsonAnnotations method)
add_organ() (mapmaker.annotation.json_annotations.JsonAnnotations method)
add_parent() (mapmaker.sources.shape.Shape method)
add_path() (mapmaker.routing.routedpath.PathRouter method)
add_pathway() (mapmaker.properties.pathways.ResolvedPathways method)
add_raster_layer() (mapmaker.flatmap.layers.MapLayer method)
add_shape() (mapmaker.sources.shapefilter.ShapeFilter method)
add_slides() (mapmaker.sources.powerpoint.svgutils.SvgMaker method)
add_source_layers() (mapmaker.flatmap.FlatMap method)
add_system() (mapmaker.annotation.json_annotations.JsonAnnotations method)
add_vessel() (mapmaker.annotation.json_annotations.JsonAnnotations method)
adobe_decode() (in module mapmaker.sources.svg.utils)
adobe_decode_markup() (in module mapmaker.sources.svg.utils)
adobe_encode() (in module mapmaker.sources.svg.utils)
anatomical_map (mapmaker.flatmap.manifest.Manifest property)
AnatomicalMap (class in mapmaker.properties.anatomicalmap)
AnatomicalNode (class in mapmaker.knowledgebase)
annotate() (mapmaker.flatmap.layers.FeatureLayer method)
Annotation (class in mapmaker.annotation.json_annotations)
annotation (mapmaker.flatmap.manifest.Manifest property)
ANNOTATION (mapmaker.knowledgebase.celldl.CD_CLASS attribute)
annotations (mapmaker.flatmap.FlatMap property)
(mapmaker.flatmap.layers.FeatureLayer property)
Annotator (class in mapmaker.annotation)
annotator (mapmaker.flatmap.FlatMap property)
(mapmaker.sources.MapSource property)
AnnotatorDatabase (class in mapmaker.knowledgebase.annotator)
arc_endpoints_to_centre() (in module mapmaker.geometry.arc_to_bezier)
area (mapmaker.flatmap.FlatMap property)
arrow() (mapmaker.geometry.shapes.GeometricShape class method)
ARTERIAL (mapmaker.knowledgebase.celldl.FC_KIND attribute)
ARTERY (mapmaker.knowledgebase.celldl.FC_KIND attribute)
as_dict (mapmaker.properties.pathways.ResolvedPath property)
as_dict() (mapmaker.properties.pathways.ConnectionSet method)
(mapmaker.sources.fc_powerpoint.connections.ConnectionClassifier method)
(mapmaker.sources.fc_powerpoint.connections.ConnectionGraph method)
(mapmaker.sources.shapefilter.CommonAttributes method)
as_encoded_turtle() (mapmaker.knowledgebase.celldl.CellDLGraph method)
as_xml() (mapmaker.knowledgebase.celldl.CellDLGraph method)
attrib_value() (mapmaker.sources.powerpoint.formula.Geometry method)
available_versions (mapmaker.output.sparc_dataset.VersionMapping property)
avLst (mapmaker.sources.powerpoint.presets.Geometry2D property)
B
bbox (mapmaker.sources.svg.rasteriser.CanvasDrawingObject property)
bezier_connect() (in module mapmaker.geometry.beziers)
bezier_control_points() (in module mapmaker.routing.routedpath)
bezier_sample() (in module mapmaker.geometry.beziers)
bezier_segments_from_arc_endpoints() (in module mapmaker.geometry.arc_to_bezier)
bezier_to_line_coords() (in module mapmaker.geometry.beziers)
bezier_to_linestring() (in module mapmaker.geometry.beziers)
biological_sex (mapmaker.flatmap.manifest.Manifest property)
blank_image() (in module mapmaker.sources)
blipFill (mapmaker.sources.powerpoint.presets.CT_GroupShapePropertiesUpdated property)
boundary_feature (mapmaker.flatmap.layers.MapLayer property)
boundary_geometry (mapmaker.sources.mbfbioscience.MBFSource property)
(mapmaker.sources.svg.SVGSource property)
bounds (mapmaker.flatmap.layers.MapLayer property)
(mapmaker.sources.MapSource property)
(mapmaker.sources.powerpoint.powerpoint.Powerpoint property)
bounds_to_extent() (in module mapmaker.geometry)
C
CanvasDrawingObject (class in mapmaker.sources.svg.rasteriser)
CanvasGroup (class in mapmaker.sources.svg.rasteriser)
CanvasImage (class in mapmaker.sources.svg.rasteriser)
CanvasPath (class in mapmaker.sources.svg.rasteriser)
CanvasText (class in mapmaker.sources.svg.rasteriser)
CARDIOVASCULAR_SYSTEM (mapmaker.knowledgebase.celldl.FC_KIND attribute)
CD_CLASS (class in mapmaker.knowledgebase.celldl)
CellDLGraph (class in mapmaker.knowledgebase.celldl)
centre (mapmaker.flatmap.FlatMap property)
(mapmaker.routing.NetworkNode property)
CHANGED (mapmaker.flatmap.manifest.GitState attribute)
check_features_on_map() (mapmaker.routing.Network method)
check_markup_errors() (mapmaker.sources.MapSource method)
check_validity() (mapmaker.knowledgebase.sckan.SckanConnection method)
circle() (mapmaker.geometry.shapes.GeometricShape class method)
circle_from_bounds() (in module mapmaker.sources.svg.utils)
circuit_graph() (mapmaker.sources.fc_powerpoint.connections.ConnectionGraph method)
clamp() (in module mapmaker.geometry.arc_to_bezier)
clean() (mapmaker.sources.svg.cleaner.SVGCleaner method)
close() (mapmaker.flatmap.FlatMap method)
(mapmaker.output.mbtiles.MBTiles method)
(mapmaker.output.sparc_dataset.DatasetDescription method)
(mapmaker.utils.logging.ProgressBar method)
closest_time_distance() (in module mapmaker.geometry.beziers)
clrMap (mapmaker.sources.powerpoint.presets.CT_SlideMasterUpdated property)
clrScheme (mapmaker.sources.powerpoint.presets.ThemeElements property)
CNS (mapmaker.knowledgebase.sckan.PATH_TYPE attribute)
collapse_centreline_graph() (in module mapmaker.routing)
colour_map (mapmaker.sources.powerpoint.powerpoint.Slide property)
colour_scheme() (mapmaker.sources.powerpoint.colour.ColourTheme method)
ColourMap (class in mapmaker.sources.powerpoint.colour)
ColourMatcher (class in mapmaker.sources.fc_powerpoint.colours)
ColourMatcherDict (class in mapmaker.sources.fc_powerpoint.colours)
colours (mapmaker.sources.svg.rasteriser.GradientStops property)
ColourScheme (class in mapmaker.sources.powerpoint.presets)
ColourTheme (class in mapmaker.sources.powerpoint.colour)
COLUMNS (mapmaker.output.sparc_dataset.DirectoryManifest attribute)
committed (mapmaker.flatmap.manifest.MapRepository property)
CommonAttributes (class in mapmaker.sources.shapefilter)
COMPONENT (mapmaker.knowledgebase.celldl.CD_CLASS attribute)
CONDUIT (mapmaker.knowledgebase.celldl.CD_CLASS attribute)
configure_logging() (in module mapmaker.utils.logging)
connect_dividers() (in module mapmaker.geometry)
connected_paths() (in module mapmaker.utils.graph)
CONNECTION (mapmaker.knowledgebase.celldl.CD_CLASS attribute)
connection (mapmaker.knowledgebase.sckan.SckanConnection property)
CONNECTION (mapmaker.sources.shape.SHAPE_TYPE attribute)
connection_set (mapmaker.flatmap.FlatMap property)
ConnectionClassifier (class in mapmaker.sources.fc_powerpoint.connections)
ConnectionGraph (class in mapmaker.sources.fc_powerpoint.connections)
connections (mapmaker.flatmap.manifest.Manifest property)
ConnectionSet (class in mapmaker.properties.pathways)
connectivity (mapmaker.flatmap.manifest.Manifest property)
(mapmaker.properties.pathways.Path property)
(mapmaker.properties.pathways.Pathways property)
(mapmaker.properties.PropertiesStore property)
connectivity() (mapmaker.flatmap.FlatMap method)
connectivity_graph_from_knowledge() (in module mapmaker.knowledgebase.sckan)
connectivity_models() (in module mapmaker.knowledgebase)
connectivity_terms (mapmaker.flatmap.manifest.Manifest property)
ConnectivityModel (class in mapmaker.properties.pathways)
CONNECTOR (mapmaker.knowledgebase.celldl.CD_CLASS attribute)
CONNECTOR_FREE_END (mapmaker.knowledgebase.celldl.FC_KIND attribute)
CONNECTOR_JOINER (mapmaker.knowledgebase.celldl.FC_KIND attribute)
CONNECTOR_NODE (mapmaker.knowledgebase.celldl.FC_KIND attribute)
CONNECTOR_PORT (mapmaker.knowledgebase.celldl.FC_KIND attribute)
contained_in() (in module mapmaker.sources.fc_powerpoint)
coords (mapmaker.geometry.LineMatcher property)
coords_to_point() (in module mapmaker.geometry.beziers)
copy_to_archive() (mapmaker.output.sparc_dataset.DirectoryManifest method)
(mapmaker.output.sparc_dataset.FlatmapDirectoryManifests method)
create_filter() (mapmaker.sources.shapefilter.ShapeFilter method)
create_geometry() (mapmaker.routing.Network method)
create_preview() (mapmaker.sources.MapSource method)
(mapmaker.sources.svg.SVGSource method)
created (mapmaker.flatmap.FlatMap property)
cSld (mapmaker.sources.powerpoint.presets.CT_SlideMasterUpdated property)
css_class() (in module mapmaker.utils.svg)
CT_GroupShapePropertiesUpdated (class in mapmaker.sources.powerpoint.presets)
CT_SlideMasterUpdated (class in mapmaker.sources.powerpoint.presets)
CT_TextMath (class in mapmaker.sources.powerpoint.presets)
cubic_bezier_control_points() (in module mapmaker.geometry.arc_to_bezier)
D
data (mapmaker.sources.RasterSource property)
dataset_image (mapmaker.output.sparc_dataset.FlatmapDirectoryManifests property)
DatasetDescription (class in mapmaker.output.sparc_dataset)
DatasetFile (class in mapmaker.output.sparc_dataset)
debug() (mapmaker.utils.logging.log static method)
definitions_ (mapmaker.sources.powerpoint.presets.PresetShapes attribute)
DefinitionStore (class in mapmaker.sources.svg.definitions)
defn (mapmaker.sources.powerpoint.presets.PresetShapes attribute)
defs (mapmaker.sources.powerpoint.presets.PresetShapes attribute)
description (mapmaker.flatmap.layers.FeatureLayer property)
(mapmaker.flatmap.manifest.Manifest property)
(mapmaker.flatmap.manifest.ManifestFile attribute)
DESCRIPTION (mapmaker.knowledgebase.celldl.FC_CLASS attribute)
description (mapmaker.knowledgebase.sckan.SckanConnection property)
(mapmaker.output.sparc_dataset.DatasetFile attribute)
detail_features (mapmaker.flatmap.layers.MapLayer property)
DIAPHRAM (mapmaker.knowledgebase.celldl.FC_KIND attribute)
direction() (in module mapmaker.sources.fc_powerpoint.connections)
DirectoryManifest (class in mapmaker.output.sparc_dataset)
DONTCARE (mapmaker.flatmap.manifest.GitState attribute)
draw_element() (mapmaker.sources.svg.rasteriser.CanvasDrawingObject method)
(mapmaker.sources.svg.rasteriser.CanvasGroup method)
(mapmaker.sources.svg.rasteriser.CanvasImage method)
(mapmaker.sources.svg.rasteriser.CanvasPath method)
(mapmaker.sources.svg.rasteriser.CanvasText method)
DRAWINGML() (in module mapmaker.sources.powerpoint.presets)
DrawMLTransform (class in mapmaker.sources.powerpoint.transform)
duplicate_feature_id() (mapmaker.flatmap.FlatMap method)
E
edge() (mapmaker.sources.fc_powerpoint.connections.ConnectionGraph method)
effectLst (mapmaker.sources.powerpoint.presets.CT_GroupShapePropertiesUpdated property)
eg_fillProperties (mapmaker.sources.powerpoint.presets.CT_GroupShapePropertiesUpdated property)
eg_groupFillProperties (mapmaker.sources.powerpoint.presets.CT_GroupShapePropertiesUpdated property)
element_style() (mapmaker.sources.svg.styling.StyleMatcher method)
ElementStyleDict (class in mapmaker.sources.svg.styling)
ellipse_point() (in module mapmaker.geometry)
elliptic_arc_derivative() (in module mapmaker.geometry.arc_to_bezier)
elliptic_arc_point() (in module mapmaker.geometry.arc_to_bezier)
end_coords (mapmaker.output.tilemaker.TileSet property)
end_nodes (mapmaker.properties.pathways.Route property)
endpoint() (in module mapmaker.geometry)
ensure_parent_system() (in module mapmaker.sources.fc_powerpoint.components)
ENTERIC (mapmaker.knowledgebase.sckan.PATH_TYPE attribute)
entities (mapmaker.flatmap.FlatMap property)
entity_name() (in module mapmaker.knowledgebase)
error() (mapmaker.sources.MapSource method)
(mapmaker.utils.logging.log static method)
errors (mapmaker.sources.MapSource property)
evaluate() (mapmaker.sources.powerpoint.formula.Evaluator static method)
(mapmaker.sources.powerpoint.formula.Geometry method)
Evaluator (class in mapmaker.sources.powerpoint.formula)
exception() (mapmaker.utils.logging.log static method)
EXCITATORY (mapmaker.knowledgebase.sckan.PATH_TYPE attribute)
execute() (mapmaker.output.mbtiles.MBTiles method)
expand_centreline_graph() (in module mapmaker.routing)
exported (mapmaker.flatmap.layers.FeatureLayer property)
extend() (mapmaker.geometry.LineMatcher method)
extend_() (in module mapmaker.geometry)
extend_divider() (in module mapmaker.geometry)
extend_geometry_by_join() (in module mapmaker.routing.routedpath)
extend_line() (in module mapmaker.geometry)
extend_lines() (mapmaker.properties.pathways.ResolvedPath method)
extend_nerves() (mapmaker.properties.pathways.ResolvedPath method)
extend_nodes() (mapmaker.properties.pathways.ResolvedPath method)
extension (mapmaker.utils.FilePath property)
extent (mapmaker.flatmap.FlatMap property)
(mapmaker.flatmap.layers.RasterLayer property)
(mapmaker.output.tilemaker.TileSet property)
(mapmaker.sources.MapSource property)
extent_to_bounds() (in module mapmaker.geometry)
extract_tile_as_image() (mapmaker.output.tilemaker.RasterImageTiler method)
(mapmaker.output.tilemaker.RasterTiler method)
ExtractionError
F
FC_CLASS (class in mapmaker.knowledgebase.celldl)
FC_KIND (class in mapmaker.knowledgebase.celldl)
FCPowerpointSource (class in mapmaker.sources.fc_powerpoint)
FCSlide (class in mapmaker.sources.fc_powerpoint)
Feature (class in mapmaker.flatmap.feature)
FEATURE (mapmaker.sources.shape.SHAPE_TYPE attribute)
feature_exported() (mapmaker.flatmap.FlatMap method)
feature_id (mapmaker.routing.NetworkNode attribute)
feature_to_geojson_ids() (mapmaker.flatmap.FlatMap method)
FeatureAnatomicalNodeMap (class in mapmaker.flatmap.feature)
FeatureLayer (class in mapmaker.flatmap.layers)
features (mapmaker.flatmap.layers.FeatureLayer property)
features_covering() (mapmaker.flatmap.FlatMap method)
(mapmaker.geometry.feature_search.FeatureSearch method)
features_for_anatomical_node() (mapmaker.flatmap.feature.FeatureAnatomicalNodeMap method)
(mapmaker.flatmap.FlatMap method)
features_inside() (mapmaker.flatmap.FlatMap method)
(mapmaker.geometry.feature_search.FeatureSearch method)
FeatureSearch (class in mapmaker.geometry.feature_search)
file_list (mapmaker.output.sparc_dataset.DirectoryManifest property)
file_set (mapmaker.flatmap.manifest.Manifest property)
file_type (mapmaker.output.sparc_dataset.DatasetFile attribute)
filename (mapmaker.output.sparc_dataset.DatasetFile attribute)
(mapmaker.utils.FilePath property)
FilePath (class in mapmaker.utils)
FilePathError
files (mapmaker.output.sparc_dataset.DirectoryManifest property)
filter() (mapmaker.sources.shapefilter.ShapeFilter method)
filter_map_shape() (mapmaker.sources.MapSource method)
FlatMap (class in mapmaker.flatmap)
flatmap (mapmaker.flatmap.layers.FeatureLayer property)
(mapmaker.sources.MapSource property)
(mapmaker.sources.powerpoint.powerpoint.Slide property)
FlatmapDirectoryManifests (class in mapmaker.output.sparc_dataset)
flatten() (mapmaker.geometry.Transform method)
(mapmaker.utils.treelist.TreeList method)
formulae (mapmaker.sources.powerpoint.formula.Evaluator attribute)
FTU (mapmaker.knowledgebase.celldl.FC_CLASS attribute)
ftu_id (mapmaker.routing.NetworkNode attribute)
ftus (mapmaker.annotation.json_annotations.JsonAnnotations property)
full_filename() (mapmaker.flatmap.FlatMap method)
full_id (mapmaker.routing.NetworkNode attribute)
full_name (mapmaker.knowledgebase.AnatomicalNode property)
fullpath (mapmaker.output.sparc_dataset.DatasetFile attribute)
G
GANGLION (mapmaker.knowledgebase.celldl.FC_KIND attribute)
gdLst (mapmaker.sources.powerpoint.presets.Geometry2D property)
generate() (mapmaker.output.sparc_dataset.SparcDataset method)
generate_connectivity() (mapmaker.knowledgebase.sckan.SckanNeuronPopulations method)
(mapmaker.properties.pathways.Pathways method)
(mapmaker.properties.PropertiesStore method)
geojson_id (mapmaker.flatmap.feature.Feature property)
(mapmaker.sources.shape.Shape property)
GeoJSONOutput (class in mapmaker.output.geojson)
geom_type (mapmaker.flatmap.feature.Feature property)
GeometricShape (class in mapmaker.geometry.shapes)
Geometry (class in mapmaker.sources.powerpoint.formula)
geometry (mapmaker.flatmap.feature.Feature property)
(mapmaker.geometry.shapes.GeometricShape property)
(mapmaker.output.tilemaker.Rect property)
(mapmaker.routing.NetworkNode property)
(mapmaker.sources.powerpoint.powerpoint.Slide property)
geometry() (mapmaker.routing.routedpath.IntermediateNode method)
Geometry2D (class in mapmaker.sources.powerpoint.presets)
geometry_from_svg_path() (in module mapmaker.sources.svg.utils)
get() (mapmaker.sources.svg.definitions.ObjectStore method)
get_by_url() (mapmaker.sources.svg.definitions.DefinitionStore method)
(mapmaker.sources.svg.definitions.ObjectStore method)
get_bytes() (mapmaker.output.sparc_dataset.DatasetDescription method)
get_BytesIO() (mapmaker.utils.FilePath method)
get_connected_subgraph() (in module mapmaker.utils.graph)
get_data() (mapmaker.utils.FilePath method)
get_derivation() (mapmaker.knowledgebase.annotator.AnnotatorDatabase method)
get_feature() (mapmaker.flatmap.FlatMap method)
get_fp() (mapmaker.utils.FilePath method)
get_image() (mapmaker.sources.svg.rasteriser.SVGTiler method)
get_json() (mapmaker.output.sparc_dataset.DatasetDescription method)
(mapmaker.utils.FilePath method)
get_knowledge() (in module mapmaker.knowledgebase)
get_label() (in module mapmaker.knowledgebase)
get_mapping() (mapmaker.output.sparc_dataset.VersionMapping method)
get_metadata() (mapmaker.sources.fc_powerpoint.connections.ConnectionGraph method)
(mapmaker.sources.shape.Shape method)
get_or_add_avLst() (mapmaker.sources.powerpoint.presets.Geometry2D method)
get_or_add_gdLst() (mapmaker.sources.powerpoint.presets.Geometry2D method)
get_or_add_pathLst() (mapmaker.sources.powerpoint.presets.Geometry2D method)
get_or_add_sldLayoutIdLst() (mapmaker.sources.powerpoint.presets.CT_SlideMasterUpdated method)
get_or_change_to_blipFill() (mapmaker.sources.powerpoint.presets.CT_GroupShapePropertiesUpdated method)
get_or_change_to_gradFill() (mapmaker.sources.powerpoint.presets.CT_GroupShapePropertiesUpdated method)
get_or_change_to_grpFill() (mapmaker.sources.powerpoint.presets.CT_GroupShapePropertiesUpdated method)
get_or_change_to_noFill() (mapmaker.sources.powerpoint.presets.CT_GroupShapePropertiesUpdated method)
get_or_change_to_pattFill() (mapmaker.sources.powerpoint.presets.CT_GroupShapePropertiesUpdated method)
get_or_change_to_solidFill() (mapmaker.sources.powerpoint.presets.CT_GroupShapePropertiesUpdated method)
get_path_colour() (in module mapmaker.output.path_colours)
get_property() (mapmaker.properties.PropertiesStore method)
(mapmaker.utils.property_mixin.PropertyMixin method)
get_raster_data() (mapmaker.sources.powerpoint.PowerpointSource method)
get_raster_source() (mapmaker.sources.fc_powerpoint.FCPowerpointSource method)
(mapmaker.sources.MapSource method)
(mapmaker.sources.mbfbioscience.MBFSource method)
(mapmaker.sources.powerpoint.PowerpointSource method)
(mapmaker.sources.svg.SVGSource method)
get_scaling() (mapmaker.output.tilemaker.RasterTiler method)
get_shape_geometry() (in module mapmaker.sources.powerpoint.geometry)
get_tile() (mapmaker.output.mbtiles.MBTiles method)
(mapmaker.output.tilemaker.RasterTiler method)
(mapmaker.sources.svg.rasteriser.SVGTiler method)
git_repository (mapmaker.flatmap.manifest.Manifest property)
git_status (mapmaker.flatmap.manifest.Manifest property)
GitState (class in mapmaker.flatmap.manifest)
global_shape (mapmaker.sources.shape.Shape property)
gradFill (mapmaker.sources.powerpoint.presets.CT_GroupShapePropertiesUpdated property)
Gradient (class in mapmaker.sources.powerpoint.svgutils)
GradientStops (class in mapmaker.sources.svg.rasteriser)
GROUP (mapmaker.sources.shape.SHAPE_TYPE attribute)
GroupValueError
grpFill (mapmaker.sources.powerpoint.presets.CT_GroupShapePropertiesUpdated property)
H
has_connectors() (mapmaker.knowledgebase.sckan.SckanNodeSet method)
has_end_connectors() (mapmaker.knowledgebase.sckan.SckanNodeSet method)
has_feature (mapmaker.knowledgebase.sckan.SckanConnection property)
has_feature() (mapmaker.flatmap.FlatMap method)
(mapmaker.routing.Network method)
has_property() (mapmaker.utils.property_mixin.PropertyMixin method)
have_tiles() (mapmaker.output.tilemaker.RasterTileMaker method)
height (mapmaker.output.tilemaker.Rect property)
href (mapmaker.sources.MapSource property)
HYPERLINK (mapmaker.knowledgebase.celldl.FC_CLASS attribute)
HYPERLINK_PROVENANCE (mapmaker.knowledgebase.celldl.FC_KIND attribute)
HYPERLINK_PUBMED (mapmaker.knowledgebase.celldl.FC_KIND attribute)
HYPERLINK_WIKIPEDIA (mapmaker.knowledgebase.celldl.FC_KIND attribute)
I
id (mapmaker.flatmap.feature.Feature property)
(mapmaker.flatmap.FlatMap property)
(mapmaker.flatmap.layers.FeatureLayer property)
(mapmaker.flatmap.layers.RasterLayer property)
(mapmaker.flatmap.manifest.Manifest property)
(mapmaker.knowledgebase.sckan.SckanConnection property)
(mapmaker.maker.MapMaker property)
(mapmaker.properties.pathways.ConnectivityModel property)
(mapmaker.properties.pathways.Path property)
(mapmaker.routing.Network property)
(mapmaker.sources.MapSource property)
(mapmaker.sources.powerpoint.powerpoint.Slide property)
Identity() (mapmaker.geometry.Transform class method)
image_offset() (in module mapmaker.utils.image)
image_rect (mapmaker.output.tilemaker.RasterTiler property)
image_size() (in module mapmaker.utils.image)
image_to_world (mapmaker.sources.mbfbioscience.MBFSource property)
(mapmaker.sources.svg.rasteriser.SVGTiler property)
ImageSource (class in mapmaker.output.styling)
ImageTiler (class in mapmaker.output.tilemaker)
info() (mapmaker.utils.logging.log static method)
INHIBITORY (mapmaker.knowledgebase.sckan.PATH_TYPE attribute)
initialise() (mapmaker.flatmap.FlatMap method)
intermediate (mapmaker.routing.NetworkNode attribute)
IntermediateNode (class in mapmaker.routing.routedpath)
intersects() (mapmaker.sources.svg.rasteriser.CanvasDrawingObject method)
INTESTIONO_FUGAL (mapmaker.knowledgebase.sckan.PATH_TYPE attribute)
INTRINSIC (mapmaker.knowledgebase.sckan.PATH_TYPE attribute)
inverse() (mapmaker.geometry.Transform method)
is_annotation() (in module mapmaker.sources.fc_powerpoint.components)
is_component() (in module mapmaker.sources.fc_powerpoint.components)
is_connection() (in module mapmaker.sources.fc_powerpoint.components)
is_connector() (in module mapmaker.sources.fc_powerpoint.components)
is_group (mapmaker.flatmap.feature.Feature property)
is_system_name() (in module mapmaker.sources.fc_powerpoint.components)
is_valid (mapmaker.sources.svg.rasteriser.CanvasGroup property)
J
join_path() (mapmaker.utils.FilePath method)
join_url() (mapmaker.utils.FilePath method)
JsonAnnotations (class in mapmaker.annotation.json_annotations)
K
kind (mapmaker.flatmap.manifest.Manifest property)
(mapmaker.sources.MapSource property)
(mapmaker.sources.powerpoint.powerpoint.Slide property)
(mapmaker.sources.RasterSource property)
(mapmaker.sources.shape.Shape property)
knowledge() (mapmaker.properties.pathways.Pathways method)
L
label (mapmaker.properties.pathways.Path property)
LAYER (mapmaker.knowledgebase.celldl.CD_CLASS attribute)
(mapmaker.knowledgebase.celldl.FC_CLASS attribute)
(mapmaker.sources.shape.SHAPE_TYPE attribute)
layer_ids (mapmaker.flatmap.FlatMap property)
layer_metadata() (mapmaker.flatmap.FlatMap method)
layers (mapmaker.flatmap.FlatMap property)
(mapmaker.sources.MapSource property)
layout() (mapmaker.routing.Network method)
(mapmaker.routing.routedpath.PathRouter method)
length_as_pixels() (in module mapmaker.sources.svg.utils)
length_as_points() (in module mapmaker.sources.svg.utils)
line (mapmaker.geometry.LineMatcher property)
line() (mapmaker.geometry.shapes.GeometricShape class method)
LineMatcher (class in mapmaker.geometry)
lines (mapmaker.properties.pathways.Path property)
local_id (mapmaker.flatmap.FlatMap property)
local_world_to_base (mapmaker.flatmap.layers.RasterLayer property)
log (class in mapmaker.utils.logging)
log_error() (mapmaker.sources.shape.Shape method)
log_warning() (mapmaker.sources.shape.Shape method)
lookup() (mapmaker.sources.fc_powerpoint.colours.ColourMatcherDict method)
(mapmaker.sources.powerpoint.colour.ColourMap method)
(mapmaker.sources.powerpoint.presets.PresetShapes static method)
lookup_shape() (mapmaker.annotation.Annotator method)
M
make() (mapmaker.maker.MapMaker method)
make_annotation() (in module mapmaker.sources.fc_powerpoint.components)
make_boundary() (in module mapmaker.geometry)
make_colour() (in module mapmaker.sources.svg.rasteriser)
make_component() (in module mapmaker.sources.fc_powerpoint.components)
make_connection() (in module mapmaker.sources.fc_powerpoint.components)
make_connector() (in module mapmaker.sources.fc_powerpoint.components)
make_fc_shape() (in module mapmaker.sources.fc_powerpoint.components)
make_list() (mapmaker.properties.pathways.Pathways static method)
make_tiles() (mapmaker.output.tilemaker.RasterTileMaker method)
make_uri() (in module mapmaker.utils)
Manifest (class in mapmaker.flatmap.manifest)
manifest (mapmaker.flatmap.FlatMap property)
(mapmaker.flatmap.manifest.Manifest property)
ManifestFile (class in mapmaker.flatmap.manifest)
map_area() (mapmaker.sources.MapSource method)
map_dir (mapmaker.flatmap.FlatMap property)
(mapmaker.maker.MapMaker property)
map_feature (mapmaker.routing.NetworkNode attribute)
map_source (mapmaker.flatmap.layers.RasterLayer property)
MapLayer (class in mapmaker.flatmap.layers)
mapmaker
module
MapMaker (class in mapmaker.maker)
mapmaker.annotation
module
mapmaker.annotation.json_annotations
module
mapmaker.exceptions
module
mapmaker.flatmap
module
mapmaker.flatmap.feature
module
mapmaker.flatmap.layers
module
mapmaker.flatmap.manifest
module
mapmaker.geometry
module
mapmaker.geometry.arc_to_bezier
module
mapmaker.geometry.beziers
module
mapmaker.geometry.feature_search
module
mapmaker.geometry.shapes
module
mapmaker.knowledgebase
module
mapmaker.knowledgebase.annotator
module
mapmaker.knowledgebase.celldl
module
mapmaker.knowledgebase.pubmed
module
mapmaker.knowledgebase.sckan
module
mapmaker.maker
module
mapmaker.output
module
mapmaker.output.geojson
module
mapmaker.output.mbtiles
module
mapmaker.output.path_colours
module
mapmaker.output.sparc_dataset
module
mapmaker.output.styling
module
mapmaker.output.tilejson
module
mapmaker.output.tilemaker
module
mapmaker.properties
module
mapmaker.properties.anatomicalmap
module
mapmaker.properties.markup
module
mapmaker.properties.pathways
module
mapmaker.routing
module
mapmaker.routing.layout
module
mapmaker.routing.options
module
mapmaker.routing.routedpath
module
mapmaker.settings
module
mapmaker.sources
module
mapmaker.sources.fc_powerpoint
module
mapmaker.sources.fc_powerpoint.colours
module
mapmaker.sources.fc_powerpoint.components
module
mapmaker.sources.fc_powerpoint.connections
module
mapmaker.sources.mbfbioscience
module
mapmaker.sources.powerpoint
module
mapmaker.sources.powerpoint.colour
module
mapmaker.sources.powerpoint.formula
module
mapmaker.sources.powerpoint.geometry
module
mapmaker.sources.powerpoint.omml2latex
module
mapmaker.sources.powerpoint.powerpoint
module
mapmaker.sources.powerpoint.presets
module
mapmaker.sources.powerpoint.svgutils
module
mapmaker.sources.powerpoint.transform
module
mapmaker.sources.shape
module
mapmaker.sources.shapefilter
module
mapmaker.sources.svg
module
mapmaker.sources.svg.cleaner
module
mapmaker.sources.svg.definitions
module
mapmaker.sources.svg.rasteriser
module
mapmaker.sources.svg.styling
module
mapmaker.sources.svg.transform
module
mapmaker.sources.svg.utils
module
mapmaker.utils
module
mapmaker.utils.graph
module
mapmaker.utils.image
module
mapmaker.utils.logging
module
mapmaker.utils.property_mixin
module
mapmaker.utils.svg
module
mapmaker.utils.treelist
module
mapping_dict (mapmaker.properties.anatomicalmap.AnatomicalMap property)
MapRepository (class in mapmaker.flatmap.manifest)
MapSource (class in mapmaker.sources)
MapStyle (class in mapmaker.output.styling)
marker_id() (in module mapmaker.sources.powerpoint.svgutils)
mask_image() (in module mapmaker.sources)
MASK_PATH_TYPE (mapmaker.knowledgebase.sckan.PATH_TYPE attribute)
MASK_PRE_POST (mapmaker.knowledgebase.sckan.PATH_TYPE attribute)
match() (mapmaker.sources.svg.styling.StyleMatcher method)
matches() (mapmaker.sources.fc_powerpoint.colours.ColourMatcher method)
matrix (mapmaker.geometry.Transform property)
MAX_ZOOM (in module mapmaker)
MBFSource (class in mapmaker.sources.mbfbioscience)
MBTiles (class in mapmaker.output.mbtiles)
MEMBRANE (mapmaker.knowledgebase.celldl.CD_CLASS attribute)
mercator_transform() (in module mapmaker.geometry)
metadata (mapmaker.flatmap.FlatMap property)
metadata() (mapmaker.output.mbtiles.MBTiles method)
MIN_ZOOM (in module mapmaker)
min_zoom (mapmaker.flatmap.layers.RasterLayer property)
models (mapmaker.flatmap.feature.Feature property)
(mapmaker.flatmap.FlatMap property)
(mapmaker.flatmap.manifest.Manifest property)
(mapmaker.properties.pathways.Path property)
module
mapmaker
mapmaker.annotation
mapmaker.annotation.json_annotations
mapmaker.exceptions
mapmaker.flatmap
mapmaker.flatmap.feature
mapmaker.flatmap.layers
mapmaker.flatmap.manifest
mapmaker.geometry
mapmaker.geometry.arc_to_bezier
mapmaker.geometry.beziers
mapmaker.geometry.feature_search
mapmaker.geometry.shapes
mapmaker.knowledgebase
mapmaker.knowledgebase.annotator
mapmaker.knowledgebase.celldl
mapmaker.knowledgebase.pubmed
mapmaker.knowledgebase.sckan
mapmaker.maker
mapmaker.output
mapmaker.output.geojson
mapmaker.output.mbtiles
mapmaker.output.path_colours
mapmaker.output.sparc_dataset
mapmaker.output.styling
mapmaker.output.tilejson
mapmaker.output.tilemaker
mapmaker.properties
mapmaker.properties.anatomicalmap
mapmaker.properties.markup
mapmaker.properties.pathways
mapmaker.routing
mapmaker.routing.layout
mapmaker.routing.options
mapmaker.routing.routedpath
mapmaker.settings
mapmaker.sources
mapmaker.sources.fc_powerpoint
mapmaker.sources.fc_powerpoint.colours
mapmaker.sources.fc_powerpoint.components
mapmaker.sources.fc_powerpoint.connections
mapmaker.sources.mbfbioscience
mapmaker.sources.powerpoint
mapmaker.sources.powerpoint.colour
mapmaker.sources.powerpoint.formula
mapmaker.sources.powerpoint.geometry
mapmaker.sources.powerpoint.omml2latex
mapmaker.sources.powerpoint.powerpoint
mapmaker.sources.powerpoint.presets
mapmaker.sources.powerpoint.svgutils
mapmaker.sources.powerpoint.transform
mapmaker.sources.shape
mapmaker.sources.shapefilter
mapmaker.sources.svg
mapmaker.sources.svg.cleaner
mapmaker.sources.svg.definitions
mapmaker.sources.svg.rasteriser
mapmaker.sources.svg.styling
mapmaker.sources.svg.transform
mapmaker.sources.svg.utils
mapmaker.utils
mapmaker.utils.graph
mapmaker.utils.image
mapmaker.utils.logging
mapmaker.utils.property_mixin
mapmaker.utils.svg
mapmaker.utils.treelist
MOTOR (mapmaker.knowledgebase.sckan.PATH_TYPE attribute)
N
name (mapmaker.annotation.json_annotations.Annotation attribute)
(mapmaker.knowledgebase.AnatomicalNode property)
(mapmaker.knowledgebase.sckan.PATH_TYPE property)
(mapmaker.sources.powerpoint.presets.ColourScheme property)
(mapmaker.sources.powerpoint.presets.PresetShape property)
(mapmaker.sources.powerpoint.presets.ThemeDefinition property)
(mapmaker.sources.shape.Shape property)
name() (mapmaker.properties.anatomicalmap.AnatomicalMap method)
name_from_id() (in module mapmaker.utils.svg)
neighbors() (mapmaker.sources.fc_powerpoint.connections.ConnectionGraph method)
NERVE (mapmaker.knowledgebase.celldl.FC_KIND attribute)
nerve_feature_ids (mapmaker.routing.routedpath.RoutedPath property)
nerve_ids_by_model (mapmaker.properties.PropertiesStore property)
nerve_models_by_id (mapmaker.properties.PropertiesStore property)
nerves (mapmaker.annotation.json_annotations.JsonAnnotations property)
(mapmaker.properties.pathways.Path property)
NERVOUS_SYSTEM (mapmaker.knowledgebase.celldl.FC_KIND attribute)
Network (class in mapmaker.routing)
network (mapmaker.properties.pathways.ConnectivityModel property)
network_feature() (mapmaker.properties.PropertiesStore method)
NetworkNode (class in mapmaker.routing)
NEURAL (mapmaker.knowledgebase.celldl.FC_CLASS attribute)
NEURON (mapmaker.knowledgebase.celldl.FC_KIND attribute)
neuron_connectivity (mapmaker.flatmap.manifest.Manifest property)
neurons_with_evidence() (mapmaker.knowledgebase.sckan.SckanNeuronPopulations method)
new() (mapmaker.sources.powerpoint.presets.PresetShapeDefinition class method)
(mapmaker.sources.powerpoint.presets.ThemeDefinition class method)
new_feature() (mapmaker.flatmap.FlatMap method)
node_feature_ids (mapmaker.routing.routedpath.RoutedPath property)
node_paths (mapmaker.properties.pathways.ResolvedPathways property)
nodes (mapmaker.properties.pathways.Route property)
noFill (mapmaker.sources.powerpoint.presets.CT_GroupShapePropertiesUpdated property)
normalised() (mapmaker.knowledgebase.AnatomicalNode method)
normalised_coords() (in module mapmaker.geometry)
not_empty() (in module mapmaker.sources)
not_in_group_properties() (in module mapmaker.properties)
npo_connectivity_paths() (in module mapmaker.knowledgebase)
ns_tag() (mapmaker.sources.mbfbioscience.MBFSource method)
O
ObjectStore (class in mapmaker.sources.svg.definitions)
offsets (mapmaker.sources.svg.rasteriser.GradientStops property)
opacity (mapmaker.sources.shape.Shape property)
openmath2latex() (in module mapmaker.sources.powerpoint.omml2latex)
ORGAN (mapmaker.knowledgebase.celldl.FC_CLASS attribute)
organ (mapmaker.sources.mbfbioscience.MBFSource property)
organs (mapmaker.annotation.json_annotations.JsonAnnotations property)
outer_geometry (mapmaker.flatmap.layers.MapLayer property)
P
paint (mapmaker.sources.svg.rasteriser.CanvasDrawingObject property)
PARASYMPATHETIC (mapmaker.knowledgebase.sckan.PATH_TYPE attribute)
parent (mapmaker.sources.shape.Shape property)
parent_list (mapmaker.annotation.json_annotations.Annotation property)
parents (mapmaker.annotation.json_annotations.Annotation attribute)
parse_layer_directive() (in module mapmaker.properties.markup)
parse_markup() (in module mapmaker.properties.markup)
parse_nerves() (in module mapmaker.properties.pathways)
parse_path_lines() (in module mapmaker.properties.pathways)
parse_route_nodes() (in module mapmaker.properties.pathways)
parse_svg_path() (in module mapmaker.sources.svg.utils)
paste_image() (in module mapmaker.utils.image)
patch_asscalar() (in module mapmaker.sources.fc_powerpoint.colours)
Path (class in mapmaker.properties.pathways)
path (mapmaker.flatmap.manifest.ManifestFile attribute)
path_blob_url() (mapmaker.flatmap.manifest.MapRepository method)
path_geometry() (mapmaker.routing.routedpath.RoutedPath method)
path_id (mapmaker.properties.pathways.Route property)
(mapmaker.routing.routedpath.RoutedPath property)
path_ids (mapmaker.properties.pathways.ConnectivityModel property)
path_list (mapmaker.sources.powerpoint.formula.Geometry property)
PATH_TYPE (class in mapmaker.knowledgebase.sckan)
path_type (mapmaker.properties.pathways.Path property)
path_type_from_phenotypes() (in module mapmaker.knowledgebase.sckan)
pathlib_path() (in module mapmaker.utils)
pathLst (mapmaker.sources.powerpoint.presets.Geometry2D property)
PathRouter (class in mapmaker.routing.routedpath)
paths (mapmaker.properties.pathways.ConnectivityModel property)
paths_dict (mapmaker.properties.pathways.ResolvedPathways property)
Pathways (class in mapmaker.properties.pathways)
pathways (mapmaker.properties.PropertiesStore property)
pattFill (mapmaker.sources.powerpoint.presets.CT_GroupShapePropertiesUpdated property)
pixel_rect (mapmaker.output.tilemaker.TileSet property)
PLEXUS (mapmaker.knowledgebase.celldl.FC_KIND attribute)
point() (mapmaker.sources.powerpoint.formula.Geometry method)
point_to_coords() (in module mapmaker.geometry.beziers)
points_to_pixels() (in module mapmaker.sources.powerpoint.svgutils)
pop_property() (mapmaker.utils.property_mixin.PropertyMixin method)
POST_GANGLIONIC (mapmaker.knowledgebase.sckan.PATH_TYPE attribute)
Powerpoint (class in mapmaker.sources.powerpoint.powerpoint)
PowerpointLayer (class in mapmaker.sources.powerpoint)
PowerpointSource (class in mapmaker.sources.powerpoint)
pptx_resolve() (in module mapmaker.sources.powerpoint.presets)
pptx_slide (mapmaker.sources.powerpoint.powerpoint.Slide property)
pptx_uri() (in module mapmaker.sources.powerpoint.presets)
PRE_GANGLIONIC (mapmaker.knowledgebase.sckan.PATH_TYPE attribute)
PresetShape (class in mapmaker.sources.powerpoint.presets)
PresetShapeDefinition (class in mapmaker.sources.powerpoint.presets)
PresetShapes (class in mapmaker.sources.powerpoint.presets)
previous (mapmaker.geometry.LineMatcher property)
process() (mapmaker.sources.fc_powerpoint.FCSlide method)
(mapmaker.sources.MapSource method)
(mapmaker.sources.mbfbioscience.MBFSource method)
(mapmaker.sources.powerpoint.powerpoint.Slide method)
(mapmaker.sources.powerpoint.PowerpointLayer method)
(mapmaker.sources.powerpoint.PowerpointSource method)
(mapmaker.sources.svg.SVGLayer method)
(mapmaker.sources.svg.SVGSource method)
process_slide_svgs() (mapmaker.sources.powerpoint.svgutils.SvgFromSlide method)
ProgressBar (class in mapmaker.utils.logging)
properties (mapmaker.annotation.json_annotations.Annotation attribute)
(mapmaker.flatmap.manifest.Manifest property)
(mapmaker.geometry.shapes.GeometricShape property)
(mapmaker.routing.NetworkNode attribute)
(mapmaker.utils.property_mixin.PropertyMixin property)
properties() (mapmaker.properties.anatomicalmap.AnatomicalMap method)
(mapmaker.properties.PropertiesStore method)
properties_from_markup() (mapmaker.sources.MapSource method)
properties_store (mapmaker.flatmap.FlatMap property)
properties_to_markup() (in module mapmaker.properties.markup)
PropertiesStore (class in mapmaker.properties)
PropertyMixin (class in mapmaker.utils.property_mixin)
publications (mapmaker.properties.pathways.ConnectivityModel property)
pubmed_knowledge() (in module mapmaker.knowledgebase.pubmed)
R
radians_from_st_angle() (in module mapmaker.sources.powerpoint.formula)
radii (mapmaker.routing.NetworkNode property)
raster_layer (mapmaker.output.tilemaker.RasterTileMaker property)
raster_layers (mapmaker.flatmap.layers.FeatureLayer property)
(mapmaker.flatmap.layers.MapLayer property)
raster_source (mapmaker.sources.MapSource property)
RasterImageTiler (class in mapmaker.output.tilemaker)
RasterLayer (class in mapmaker.flatmap.layers)
RasterSource (class in mapmaker.sources)
RasterTileMaker (class in mapmaker.output.tilemaker)
RasterTiler (class in mapmaker.output.tilemaker)
RasterTileSource (class in mapmaker.output.styling)
Rect (class in mapmaker.output.tilemaker)
reflect_point() (in module mapmaker.geometry)
relative_path() (in module mapmaker.utils)
remotes (mapmaker.flatmap.manifest.MapRepository property)
remove_edge() (mapmaker.sources.fc_powerpoint.connections.ConnectionGraph method)
reset_filter() (mapmaker.sources.shapefilter.ShapeFilter method)
ResolvedPath (class in mapmaker.properties.pathways)
ResolvedPathways (class in mapmaker.properties.pathways)
results() (mapmaker.routing.layout.TransitMap method)
rgb_colour (mapmaker.sources.fc_powerpoint.colours.ColourMatcher property)
rotate_angle() (mapmaker.geometry.Transform method)
Route (class in mapmaker.properties.pathways)
route (mapmaker.properties.pathways.Path property)
route_graph_from_path() (mapmaker.routing.Network method)
RoutedPath (class in mapmaker.routing.routedpath)
S
save() (mapmaker.annotation.Annotator method)
(mapmaker.annotation.json_annotations.JsonAnnotations method)
(mapmaker.output.geojson.GeoJSONOutput method)
(mapmaker.output.sparc_dataset.SparcDataset method)
(mapmaker.sources.powerpoint.svgutils.SvgMaker method)
(mapmaker.sources.svg.cleaner.SVGCleaner method)
save_feature_for_node_lookup() (mapmaker.flatmap.FlatMap method)
save_geometry() (in module mapmaker.geometry)
save_tile_as_png() (mapmaker.output.mbtiles.MBTiles method)
scale() (mapmaker.geometry.Transform class method)
scale_length() (mapmaker.geometry.Transform method)
scheme_colour() (mapmaker.sources.powerpoint.colour.ColourMap method)
sckan_build() (in module mapmaker.knowledgebase)
sckan_neuron_populations (mapmaker.flatmap.FlatMap property)
sckan_version (mapmaker.flatmap.manifest.Manifest property)
(mapmaker.maker.MapMaker property)
SckanConnection (class in mapmaker.knowledgebase.sckan)
SckanNeuronChecker (class in mapmaker.knowledgebase.sckan)
SckanNeuronPopulations (class in mapmaker.knowledgebase.sckan)
SckanNodeSet (class in mapmaker.knowledgebase.sckan)
segment_as_string() (in module mapmaker.sources.powerpoint.geometry)
SENSORY (mapmaker.knowledgebase.sckan.PATH_TYPE attribute)
set_as_list() (in module mapmaker.utils)
set_bezier_path_end_to_point() (in module mapmaker.geometry.beziers)
set_feature_properties() (mapmaker.flatmap.layers.FeatureLayer method)
set_metadata() (mapmaker.sources.shape.Shape method)
set_model_id() (mapmaker.properties.pathways.ResolvedPath method)
set_properties_from_feature() (mapmaker.routing.NetworkNode method)
set_property() (mapmaker.properties.PropertiesStore method)
(mapmaker.utils.property_mixin.PropertyMixin method)
set_relationship_property() (in module mapmaker.sources.powerpoint)
sha (mapmaker.flatmap.manifest.MapRepository property)
Shape (class in mapmaker.sources.shape)
shape() (mapmaker.sources.powerpoint.powerpoint.Slide method)
shape_kind (mapmaker.sources.powerpoint.formula.Geometry property)
shape_name (mapmaker.sources.shape.Shape property)
SHAPE_TYPE (class in mapmaker.sources.shape)
ShapeFilter (class in mapmaker.sources.shapefilter)
shapes (mapmaker.sources.powerpoint.powerpoint.Slide property)
similar_direction() (in module mapmaker.sources.fc_powerpoint.connections)
size (mapmaker.output.tilemaker.Rect property)
(mapmaker.sources.svg.rasteriser.SVGTiler property)
size_as_int (mapmaker.output.tilemaker.Rect property)
sldLayoutIdLst (mapmaker.sources.powerpoint.presets.CT_SlideMasterUpdated property)
Slide (class in mapmaker.sources.powerpoint.powerpoint)
slide (mapmaker.sources.powerpoint.PowerpointLayer property)
slide_id (mapmaker.sources.powerpoint.powerpoint.Slide property)
slide_number (mapmaker.sources.powerpoint.PowerpointLayer property)
slides (mapmaker.sources.powerpoint.powerpoint.Powerpoint property)
smooth_edges() (in module mapmaker.utils.graph)
smooth_join() (in module mapmaker.routing.routedpath)
solidFill (mapmaker.sources.powerpoint.presets.CT_GroupShapePropertiesUpdated property)
solve() (mapmaker.routing.layout.TransitMap method)
source (mapmaker.flatmap.layers.MapLayer property)
(mapmaker.properties.pathways.ConnectivityModel property)
(mapmaker.properties.pathways.Path property)
(mapmaker.sources.powerpoint.powerpoint.Slide property)
source_data (mapmaker.flatmap.layers.RasterLayer property)
source_extent (mapmaker.flatmap.layers.RasterLayer property)
source_id (mapmaker.sources.powerpoint.powerpoint.Slide property)
source_kind (mapmaker.flatmap.layers.RasterLayer property)
source_path (mapmaker.flatmap.layers.RasterLayer property)
(mapmaker.sources.RasterSource property)
source_range (mapmaker.flatmap.layers.RasterLayer property)
(mapmaker.sources.MapSource property)
sources (mapmaker.flatmap.manifest.Manifest property)
sparc_dataset() (in module mapmaker.sources.mbfbioscience)
SparcDataset (class in mapmaker.output.sparc_dataset)
species (mapmaker.sources.mbfbioscience.MBFSource property)
SPINAL_ASCENDING (mapmaker.knowledgebase.sckan.PATH_TYPE attribute)
SPINAL_DESCENDING (mapmaker.knowledgebase.sckan.PATH_TYPE attribute)
split_bezier_path_at_point() (in module mapmaker.geometry.beziers)
st_angle() (in module mapmaker.sources.powerpoint.formula)
STAGED (mapmaker.flatmap.manifest.GitState attribute)
start_coords (mapmaker.output.tilemaker.TileSet property)
start_nodes (mapmaker.properties.pathways.Route property)
status() (mapmaker.flatmap.manifest.MapRepository method)
style() (mapmaker.output.styling.ImageSource static method)
(mapmaker.output.styling.MapStyle static method)
(mapmaker.output.styling.RasterTileSource static method)
(mapmaker.output.styling.TileSources static method)
(mapmaker.output.styling.VectorTileSource static method)
StyleMatcher (class in mapmaker.sources.svg.styling)
svg_angle() (in module mapmaker.geometry.arc_to_bezier)
svg_bytes() (mapmaker.sources.powerpoint.svgutils.SvgMaker method)
svg_element_from_feature() (in module mapmaker.sources.svg.utils)
svg_id() (in module mapmaker.utils.svg)
svg_markup() (in module mapmaker.sources.svg.utils)
svg_matrix (mapmaker.geometry.Transform property)
SVG_TAG() (in module mapmaker.sources.svg.utils)
SVGCleaner (class in mapmaker.sources.svg.cleaner)
SvgFromSlide (class in mapmaker.sources.powerpoint.svgutils)
SVGImageTiler (class in mapmaker.output.tilemaker)
SVGLayer (class in mapmaker.sources.svg)
SvgMaker (class in mapmaker.sources.powerpoint.svgutils)
SVGSource (class in mapmaker.sources.svg)
SVGTiler (class in mapmaker.sources.svg.rasteriser)
SVGTransform (class in mapmaker.sources.svg.transform)
SYMPATHETIC (mapmaker.knowledgebase.sckan.PATH_TYPE attribute)
SYSTEM (mapmaker.knowledgebase.celldl.FC_CLASS attribute)
system_ids() (in module mapmaker.sources.fc_powerpoint.components)
systems (mapmaker.annotation.json_annotations.JsonAnnotations property)
T
term (mapmaker.annotation.json_annotations.Annotation attribute)
text_alignment() (in module mapmaker.sources.powerpoint.svgutils)
text_content() (in module mapmaker.sources.powerpoint.svgutils)
ThemeDefinition (class in mapmaker.sources.powerpoint.presets)
ThemeElements (class in mapmaker.sources.powerpoint.presets)
themeElements (mapmaker.sources.powerpoint.presets.ThemeDefinition property)
through_nodes (mapmaker.properties.pathways.Route property)
tile_coords_to_pixels (mapmaker.output.tilemaker.TileSet property)
tile_json() (in module mapmaker.output.tilejson)
tile_pixels_to_image() (mapmaker.output.tilemaker.TileSet method)
tile_pixels_to_world (mapmaker.output.tilemaker.TileSet property)
tile_size (mapmaker.output.tilemaker.RasterTiler property)
(mapmaker.output.tilemaker.TileSet property)
tiles (mapmaker.output.tilemaker.TileSet property)
TileSet (class in mapmaker.output.tilemaker)
TileSources (class in mapmaker.output.styling)
timestamp (mapmaker.output.sparc_dataset.DatasetFile attribute)
trace (mapmaker.properties.pathways.Path property)
Transform (class in mapmaker.geometry)
(class in mapmaker.output.tilemaker)
transform (mapmaker.sources.powerpoint.powerpoint.Powerpoint property)
(mapmaker.sources.powerpoint.PowerpointSource property)
(mapmaker.sources.svg.SVGSource property)
transform_extent() (mapmaker.geometry.Transform method)
transform_geometry() (mapmaker.geometry.Transform method)
transform_point() (mapmaker.geometry.Transform method)
transform_rect() (mapmaker.output.tilemaker.Transform method)
transformed_clipped_canvas() (mapmaker.sources.svg.rasteriser.CanvasDrawingObject method)
TransitMap (class in mapmaker.routing.layout)
TreeList (class in mapmaker.utils.treelist)
tuple2 (class in mapmaker.geometry.arc_to_bezier)
type_paths (mapmaker.properties.pathways.ResolvedPathways property)
U
UNKNOWN (mapmaker.flatmap.manifest.GitState attribute)
(mapmaker.knowledgebase.celldl.CD_CLASS attribute)
(mapmaker.knowledgebase.celldl.FC_CLASS attribute)
(mapmaker.knowledgebase.celldl.FC_KIND attribute)
(mapmaker.knowledgebase.sckan.PATH_TYPE attribute)
UNTRACKED (mapmaker.flatmap.manifest.GitState attribute)
update() (mapmaker.utils.logging.ProgressBar method)
update_annotations() (mapmaker.flatmap.FlatMap method)
update_line_or_nerve_properties() (mapmaker.properties.pathways.Pathways method)
update_properties() (mapmaker.properties.PropertiesStore method)
url (mapmaker.flatmap.manifest.Manifest property)
(mapmaker.sources.powerpoint.svgutils.Gradient property)
(mapmaker.utils.FilePath property)
use() (mapmaker.sources.svg.definitions.DefinitionStore method)
uuid (mapmaker.flatmap.FlatMap property)
(mapmaker.maker.MapMaker property)
V
valid_markup() (in module mapmaker.sources.powerpoint.svgutils)
valid_sckan_paths() (mapmaker.knowledgebase.sckan.SckanNeuronChecker method)
VASCULAR (mapmaker.knowledgebase.celldl.FC_CLASS attribute)
VASCULAR_REGION (mapmaker.knowledgebase.celldl.FC_KIND attribute)
VectorTileSource (class in mapmaker.output.styling)
VEIN (mapmaker.knowledgebase.celldl.FC_KIND attribute)
VENOUS (mapmaker.knowledgebase.celldl.FC_KIND attribute)
VersionMapping (class in mapmaker.output.sparc_dataset)
vessels (mapmaker.annotation.json_annotations.JsonAnnotations property)
viewer_kind (mapmaker.knowledgebase.sckan.PATH_TYPE property)
visible() (mapmaker.flatmap.feature.Feature method)
W
warning() (mapmaker.utils.logging.log static method)
width (mapmaker.output.tilemaker.Rect property)
width_along_line() (in module mapmaker.geometry.beziers)
world_to_tile_pixels (mapmaker.output.tilemaker.TileSet property)
wrap_element() (in module mapmaker.sources.svg.styling)
write() (mapmaker.output.sparc_dataset.DatasetDescription method)
X
x (mapmaker.geometry.arc_to_bezier.tuple2 attribute)
x0 (mapmaker.output.tilemaker.Rect property)
x1 (mapmaker.output.tilemaker.Rect property)
xfrm (mapmaker.sources.powerpoint.formula.Geometry property)
(mapmaker.sources.powerpoint.presets.CT_GroupShapePropertiesUpdated property)
Y
y (mapmaker.geometry.arc_to_bezier.tuple2 attribute)
y0 (mapmaker.output.tilemaker.Rect property)
y1 (mapmaker.output.tilemaker.Rect property)
Z
zoom (mapmaker.flatmap.layers.MapLayer property)
(mapmaker.maker.MapMaker property)
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